Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs139082576 chr1:102943907 A/T 1.1E-6 179 13.03 13.73 2.7 KM Plot
ESCA rs139901862 chr3:46012542 T/TA 0 182 13.33 13.1 0.8 KM Plot
ESCA rs139928556 chr8:8614505 C/CA 0.000105 180 13.22 16.02 4.57 KM Plot
ESCA rs139970542 chr6:170167691 T/TAC 4.36E-8 183 12.9 20.65 1.57 KM Plot
ESCA rs140978293 chr1:247181343 T/TA 1.22E-7 180 13.22 17.22 3.87 KM Plot
ESCA rs141710302 chr10:38279138 C/CTTTA 0 184 12.93 16.97 0.3 KM Plot
ESCA rs141791123 chr8:67396295 TTGTTGTTTG/TT 2.33E-8 182 13.33 13.67 3.43 KM Plot
ESCA rs142352137 chr12:6841882 CTA/C 1.92E-8 182 12.93 20.5 1.57 KM Plot
ESCA rs142609706 chr16:654491 CCTT/C 4.69E-6 181 13.18 16.22 0.87 KM Plot
ESCA rs143018468 chr1:102912089 G/C 9.44E-7 180 12.98 18.6 2.7 KM Plot
ESCA rs143928170 chr16:8715388 G/GCCACCCATATGCGGAGATGACC 4.43E-5 184 3.2 13.03 13.4 KM Plot
ESCA rs1448299 chr2:223938748 A/G 4.37E-5 183 6.85 13.73 13.35 KM Plot
ESCA rs1448300 chr2:223938651 A/T 4.37E-5 183 6.85 13.73 13.35 KM Plot
ESCA rs144876704 chr8:41372676 T/TA 2.13E-7 180 12.97 18.53 2.7 KM Plot
ESCA rs145542922 chr20:47936976 AAAAT/A 1.55E-6 180 12.85 16 6 KM Plot